Last updated: 2025-05-30

Checks: 2 0

Knit directory: prs/

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R Markdown file: up-to-date

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Repository version: 89ee7ca

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/.Rhistory
    Ignored:    data/.DS_Store

Untracked files:
    Untracked:  analysis/asthma_wb/
    Untracked:  analysis/continuous_artery/
    Untracked:  analysis/continuous_wb/
    Untracked:  analysis/continuous_wb_m1/
    Untracked:  analysis/continuous_wb_m2/
    Untracked:  analysis/metadata.txt
    Untracked:  analysis/metadata_artery.txt
    Untracked:  analysis/metadata_artery_quantile.txt
    Untracked:  analysis/metadata_asthma.txt
    Untracked:  analysis/metadata_asthma_quantile.txt
    Untracked:  analysis/metadata_quantile.txt
    Untracked:  analysis/normalized_counts.rda
    Untracked:  analysis/prs_asthma.txt
    Untracked:  analysis/quantile_artery/
    Untracked:  analysis/quantile_wb/
    Untracked:  analysis/quantile_wb_m1/
    Untracked:  analysis/quantile_wb_m2/
    Untracked:  analysis/vst norm counts.rda
    Untracked:  data/Artery_Aorta.v8.covariates.txt
    Untracked:  data/GTEx_v8.bk
    Untracked:  data/GTEx_v8.rds
    Untracked:  data/PGS001787.txt
    Untracked:  data/PGS001787_hmPOS_GRCh38.txt
    Untracked:  data/T2D_hmPOS_GRCh38.txt
    Untracked:  data/Whole_Blood.v8.covariates.txt
    Untracked:  data/blood_cell/
    Untracked:  data/endotype_sumstats/
    Untracked:  data/gene_reads_2017-06-05_v8_artery_aorta.gct
    Untracked:  data/gene_reads_2017-06-05_v8_whole_blood.gct
    Untracked:  data/gene_tpm_2017-06-05_v8_whole_blood.gct.gz
    Untracked:  data/immune/
    Untracked:  data/pca.eigenval
    Untracked:  data/pca.eigenvec
    Untracked:  data/protein-coding_gene.txt
    Untracked:  metadata_asthma_m2.csv
    Untracked:  metadata_quantile_asthma_m2.csv
    Untracked:  wb_exp_count.csv

Unstaged changes:
    Modified:   analysis/PRS.Rmd
    Deleted:    analysis/QC.Rmd
    Modified:   analysis/metadata.Rmd
    Deleted:    analysis/normalized_counts.txt
    Modified:   analysis/prs_blood_cell.txt
    Modified:   prs.Rproj

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File Version Author Date Message
Rmd 89ee7ca ElisaChen 2025-05-30 workflowr::wflow_publish("analysis/index.Rmd")
html 36ca2c8 ElisaChen 2025-05-30 Build site.
Rmd 5146127 ElisaChen 2025-05-30 workflowr::wflow_publish(c("analysis/index.Rmd", "analysis/asthma_wb.Rmd",
html e98f76f ElisaChen 2025-05-14 Build site.
Rmd 86b0f74 ElisaChen 2025-05-14 workflowr::wflow_publish("analysis/index.Rmd")
html 2b73cc3 ElisaChen 2025-05-13 Build site.
Rmd c5d5446 ElisaChen 2025-05-13 workflowr::wflow_publish(c("analysis/PRS.Rmd", "analysis/index.Rmd",
html d129b3e ElisaChen 2025-05-07 Build site.
html c4ece77 ElisaChen 2025-04-30 Build site.
Rmd 5b80e27 ElisaChen 2025-04-30 workflowr::wflow_publish(c("analysis/differential_expression.Rmd",
html eba00c6 ElisaChen 2025-04-24 Build site.
Rmd 077b30f ElisaChen 2025-04-24 wflow_publish(c("analysis/index.Rmd", "analysis/about.Rmd", "analysis/license.Rmd",
Rmd 7338250 ElisaChen 2025-04-17 first commit
Rmd 470bb78 ElisaChen 2025-04-17 Start workflowr project.

Welcome to my research website.

Data

Differential Expression

Asthma application